FastQCFastQC Report
Wed 31 May 2023
EGAF00007935178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425733
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA28640.6727221051692023No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28450.6682592141083731No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26900.6318514186121348No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24330.5714849447893398No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19940.468368672383865No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18100.4251490957947822No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16860.3960228593977916No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15070.3539777278247164No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14530.3412937216518334No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13980.3283748264757489No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13380.31428148628365665No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG13370.31404659728045514No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13060.3067650381812075No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12890.3027719251267813No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG12730.29901370107555675No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11730.27552480075540303No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11590.27223635471058155No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11440.26871301966255845No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG11300.26542457361773697No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11200.2630756835857216No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11100.2607267935537062No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11020.2588476815280939No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10670.2506265664160401No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9730.2285470001150956No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9620.2259632210798787No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9430.2215003300190495No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9330.21915143998703412No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9280.21797699497102643No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8480.19918587471490348No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7990.18767631355802816No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7550.17734119741716053No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6850.1608989671930529No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6770.1590198551674406No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6020.14140317992732535No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5690.1336518428216746No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5490.12895406275764387No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5310.1247260607000162No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5160.12120272565199315No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5150.12096783664879163No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG4940.11603516758155934No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4880.11462583356235011No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4860.11415605555594704No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4800.1127467215367378No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT4540.10663960745349785No Hit
CATGTCGATAACCGCGCGACGAGCTGCGCCGTTGCTCATGTTTA4450.104525606424684No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4320.10147204938306405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)