FastQCFastQC Report
Sun 21 May 2023
EGAF00007935181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501412
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA35230.7026158129442455No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29210.5825548650610676No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19270.38431469530047146No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17760.3541997399344252No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17130.34163522213269726No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16130.3216915430823355No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15000.29915518575542666No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14420.28758785190621683No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12470.24869767775801138No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12040.2401218957663558No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11500.22935230907916046No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11120.22177371104002297No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10700.21339736583887103No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10630.2120013083053457No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10100.20143115840865394No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9430.18806889344491157No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8710.17370944452865109No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8550.1705184558805932No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6460.1288361666653371No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6420.12803841950332262No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5610.11188403947252958No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5590.11148516589152234No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5290.10550206217641381No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5210.10390656785238486No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5140.10251051031885954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)