FastQCFastQC Report
Sun 21 May 2023
EGAF00007935186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449392
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9290.20672375120162353No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7400.16466692776017375No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6640.14775518923345318No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6560.14597500623064052No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6500.144639868978531No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6150.13685156834122547No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5840.1299533592053263No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4700.10458575141524548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)