FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488769
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29930.6123547115303958No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15820.3236702818713953No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13250.2710892057393165No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8800.18004415173630078No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7450.15242374209493648No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7400.1514007639600711No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6820.13953421759563311No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5550.11355057297005335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)