FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483404
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11890.24596403836128788No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11520.23830998502287942No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10960.22672547186204497No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9250.19135133346021133No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8360.17294023218674234No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7590.15701152659059503No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7350.15204673523595172No Hit
AACCAGGGTGACGTTAATCGGGAACACGTCAAAATAGGTATCAC7240.1497712058650735No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6220.1286708426078394No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6180.12784337738206553No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT5800.1199824577372136No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5330.11025974133437041No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5180.10715674673771834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)