FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483404
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28850.5968092940894159No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14240.2945776203755037No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14080.2912677594724082No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12220.2527906264739224No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11130.23024219907158402No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10510.2174164880720888No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8660.17914622138004652No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7980.16507931254189043No Hit
ATGTCCGATCACCACTTCCCGGCCTCCCTGC7470.1545291309132734No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7040.1456338797362041No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5820.12039619035010053No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC5650.11687946314056152No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5120.10591554889905752No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5080.10508808367328364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)