FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460767
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17240.37415873966668617No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15600.33856591292345156No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT13320.28908320257310094No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11640.25262225810442157No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11450.24849869890855897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11430.24806464004583662No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10660.23135337383102522No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8120.17622789826528376No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7020.1523546608155532No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6880.14931624877649657No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6390.13868180663979843No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6170.13390715914985232No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5930.12869845279718384No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5900.12804736450310025No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5650.12262162871907059No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5630.12218756985634821No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5000.10851471568059344No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4880.1059103625042592No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4850.10525927421017563No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4790.10395709762200851No Hit

[OK]Adapter Content

Adapter graph