FastQCFastQC Report
Sun 21 May 2023
EGAF00007935206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426822
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7230.169391455923078No Hit
CCACAGATCGTCGAAGATGTCGTTGCGACGACGGCAATCACGCG5330.12487641218119029No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5130.12019061810309684No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5100.11948774899138283No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4880.11433337550548005No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4590.10753897409224455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)