FastQCFastQC Report
Sun 21 May 2023
EGAF00007935213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458380
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29410.6416073999738209No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15060.3285483659845543No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6920.15096644705266374No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5960.13002312491819015No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5290.11540643134517212No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5220.1138793141062001No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5000.10907980278371658No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4700.10253501461669356No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4630.10100789737772153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)