FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471771
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17240.3654315335194406No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15510.3287611998194039No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12940.27428561738640145No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11460.24291446485689033No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11430.24227856311642726No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9090.1926782273603083No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8130.17232937166549023No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7600.16109510758397613No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7210.1528283849579563No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6810.14434969508511544No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6720.14244198986372625No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5860.12421280663711842No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5810.12315297040301333No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5390.11425034603653042No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4920.10428788543594245No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4900.1038639509423004No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4740.10047247499316404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)