FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451754
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11090.2454875883777454No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10150.22467980360992929No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8080.17885840523824914No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7020.1553943075213501No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6960.15406615104680865No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6650.14720400926167782No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5590.1237399115447788No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5100.11289330033602359No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4640.10271076736453912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)