FastQCFastQC Report
Wed 31 May 2023
EGAF00007935225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451754
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47281.0465873019386658No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13970.30923909915573516No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13290.29418665911093206No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10860.24039632189200316No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9220.20409337825453674No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7440.1646914028431403No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7060.1562797451710444No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5670.1255107868441674No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5410.11975544212115444No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4880.10802339326270492No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4700.10403892383908056No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4610.10204668912726837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)