FastQCFastQC Report
Wed 31 May 2023
EGAF00007935235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451194
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22520.4991201124128424No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC18070.4004929143561306No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC17430.386308328568199No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG16950.37566988922725036No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG14400.31915318022846045No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC12060.2672907884413357No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10330.2289480799833331No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10200.2260668359951595No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG10040.2225206895481766No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9850.21830964064238445No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9800.21720146987770228No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG9540.2114389819013551No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG9370.20767120130143574No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9060.2008005425604064No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8960.19858420103104207No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8700.19282171305469487No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7970.1766424198903354No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7320.16223619994946742No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7100.15736024858486594No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6640.1471650775497901No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6610.14650017509098082No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6050.1340886625265407No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5750.1274396379384478No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5680.12588819886789274No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5520.12234205242090984No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5370.11901754012686339No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC4870.10793583248004185No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4860.10771419832710542No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4830.10704929586829613No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC4780.10594112510361398No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4620.10239497865663107No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)