FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454100
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG16500.36335608896718785No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG15030.33098436467738385No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG14270.3142479630037437No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG11290.24862365117815458No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG10290.22660207002862803No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG9660.21272847390442634No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9510.20942523673199734No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8610.1896058136974235No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8430.1856419290905087No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8350.18388020259854657No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8230.1812376128606034No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG8190.18035674961462234No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8160.17969610218013654No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG8060.17749394406518387No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8020.17661308081920282No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7760.17088746972032592No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6820.15018718343977097No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6810.14996696762827572No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT6620.14578286720986566No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6440.1418189826029509No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5500.12111869632239596No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5440.11979740145342435No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5400.11891653820744329No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5270.11605373265800485No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT4890.10768553182118476No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT4750.10460251046025104No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC4730.1041620788372605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)