FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454100
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22510.49570579167584233No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC17700.3897819863466197No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC17230.3794318432063422No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG16970.37370623210746534No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG14260.3140277471922484No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC12010.2644791896058137No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG10410.22924465976657127No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10340.22770314908610437No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10220.22506055934816122No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9850.2169125743228364No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9820.21625192688835057No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9150.2014974675181678No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG9050.19929530940321513No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG9040.19907509359171988No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8620.18982602950891875No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8450.1860823607134992No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8420.18542171327901344No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7900.17397049108125962No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7710.1697863906628496No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6990.15393085223519049No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6840.1506276150627615No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6820.15018718343977097No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5960.13124862365117815No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5930.13058797621669235No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5710.12574322836379653No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5660.1246421493063202No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5380.11847610658445276No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5320.11715481171548119No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC4850.1068046685752037No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4820.1061440211407179No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4770.10504294208324158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)