FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460088
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23260.505555458955678No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18690.40622663490462696No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11780.2560379753438473No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7790.16931543530802803No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7430.16149084522960824No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7160.1556224026707934No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6870.14931926066317747No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6800.14779781259237362No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5870.12758428822312254No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5600.1217158456643077No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5290.11497800420789067No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5210.11323920641268627No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5000.10867486220027472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)