FastQCFastQC Report
Wed 31 May 2023
EGAF00007935241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443563
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47301.0663648681247082No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16120.36342075421078857No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8550.19275728588723587No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG7980.17990680016142013No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7150.16119468936768847No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5540.12489770337020896No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5390.12151599660025746No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5030.11339990035237385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)