FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467818
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22100.4724059356416384No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17340.3706569648880548No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG8780.18767982420513962No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8650.18490096576018877No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8270.17677814876725564No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5850.12504863002278663No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5660.12098722152632006No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5040.10773420432732388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)