FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434404
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21950.5052900065376931No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16220.3733851437832064No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12010.2764707507297355No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7700.17725435309067133No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4900.11279822469406359No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4620.10635261185440281No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4520.10405060726880967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)