FastQCFastQC Report
Wed 31 May 2023
EGAF00007935247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412241
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44691.0840746068440548No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14580.35367661149667307No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12580.3051613012776507No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11830.2869680599455173No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9340.22656649872283446No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8870.21516540082136418No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG8760.21249705875931799No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8730.21176932910603263No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7260.1761105760950512No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6970.16907585611329295No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6580.1596153706205836No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6280.15233807408773023No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6240.15136776788334977No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6020.14603108375925733No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5710.13851121067530886No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5530.13414483275559685No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4480.10867429489061009No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4430.10746141213513455No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4270.10358018731761276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)