FastQCFastQC Report
Wed 31 May 2023
EGAF00007935250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393128
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13830.35179381778962576No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9790.24902830630227304No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8480.2157058260922651No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7580.19281251907775585No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7250.18441830650576913No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5860.14906086567224924No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4790.12184326733277712No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4560.11599275554018029No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4300.1093791335137665No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4230.10759854296819357No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4020.10225677133147473No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4010.10200240125353575No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG3960.10073055086384079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)