FastQCFastQC Report
Sun 21 May 2023
EGAF00007935251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393128
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41871.065047516330559No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13780.3505219673999308No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10080.2564050385625038No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8760.2228281882745569No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8170.2078203536761564No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7470.19001444822042696No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6140.15618322785454103No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5810.14778901528255428No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5090.12947436967094686No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5000.12718503896949593No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4880.12413259803422803No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC4660.11853645631957023No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4630.11777334608575325No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4360.11090535398140045No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4290.10912476343582751No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4240.10785291304613255No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4200.1068354327343766No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4180.1063266925784986No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4040.10276551148735273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)