FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences369304
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39881.0798691592834089No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10720.29027576197387517No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8560.23178736217316898No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8450.22880878625739226No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8300.22474709182678768No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8250.22339319368325283No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8220.2225808547971319No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6120.16571713276866756No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5920.16030154019452808No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5410.14649177913047245No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5360.14513788098693758No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4750.12862032363581224No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4260.11535212182917055No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4230.11453978294304963No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4100.11101964776985898No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG3960.10722873296796136No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3800.10289625890864978No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA3790.10262547927994282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)