FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376914
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38661.0256981698742949No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10390.2756596995601118No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9890.26239407397974074No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8830.23427094774935397No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8780.23294438519131686No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8200.21755625951808635No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8190.21729094700647894No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6050.16051406952249053No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5600.14857500650015654No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5040.13371750585014086No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4840.12841125561799244No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4830.12814594310638502No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4510.11965594273494748No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4210.11169656738672482No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4180.11090062985190255No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3800.10081875441082051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)