FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404862
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44301.094199999012009No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31440.7765609022333536No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10850.267992550548088No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9840.24304577856158394No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7060.17438040616308767No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6990.17265142196600322No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6370.1573375619346839No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6140.15165661385854934No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6000.14819864546438047No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5340.1318967944632986No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5300.13090880349353606No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4190.10349205408262567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)