FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430531
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37850.8791469139272201No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21170.49171836638941213No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20790.48289205655341894No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16700.387893090160755No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14620.33958065737426574No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14340.3330770606530076No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13560.31495989835807414No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13530.3142630844236536No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11770.27338333360431655No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11060.2568920704896976No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9740.2262322573751948No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9040.2099732655720494No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8790.20416648278521174No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6590.15306679426104045No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6470.15027953852335837No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6280.14586638360536175No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5840.1356464459005275No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4480.10405754754013068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)