FastQCFastQC Report
Wed 31 May 2023
EGAF00007935262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483272
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18260.37784105017464287No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13180.2727242629409525No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11920.24665198894204504No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9710.20092204803919947No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9100.18829975665877602No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8340.1725736231356255No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8160.168849012564353No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7950.16450363356453507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)