FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483272
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41680.8624542700590971No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34430.7124352331606217No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18850.39004949593603605No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17930.3710125974606433No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14460.2992103825588902No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9530.19719743746792698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)