FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517695
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18580.35889857927930535No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13860.2677252049952192No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13610.2628961067810197No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10780.2082307149962816No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9580.1850510435681241No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9180.1773244864254049No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8940.17268855213977344No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8780.16959792928268577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)