FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447999
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36990.8256714858738525No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18130.40468840332232886No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10370.23147373096814947No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9410.21004511170783863No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9170.20468795689276092No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8340.1861611298239505No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8270.1845986263362195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7980.17812539760133395No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7460.1665182288353322No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6900.15401820093348423No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6720.15000033482217592No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6460.1441967504391751No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6260.13973245475994367No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5920.13214315210525024No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5880.13125029296940396No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5600.12500027901847996No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5480.12232170161094108No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5370.11986633898736382No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5290.11808062071567123No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4870.10870559978928525No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG4660.10401808932609224No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4540.1013395119185534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)