FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519291
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24570.4731451151666407No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20250.3899547652472313No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18780.36164693784409896No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12470.24013510729051726No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12300.23686141296498497No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6530.12574837615132942No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5800.11169074757698477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)