FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519291
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48760.9389725606644445No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46320.8919854185803335No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26200.5045340666408622No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24410.47006399109555147No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6570.1265186571691017No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5720.11015018554144015No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5590.10764677223368015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)