FastQCFastQC Report
Wed 31 May 2023
EGAF00007935270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528166
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25780.4881041187808378No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20860.3949515871903909No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19050.3606820582922793No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12880.24386272497661718No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12080.2287159718724795No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6840.12950473904037746No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5860.11094996648780876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)