FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528166
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA50880.9633334974231587No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44880.8497328491421258No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26700.5055228848505962No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23950.4534559210551228No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6850.1296940734541792No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6470.12249936572971377No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5850.11076063207400702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)