FastQCFastQC Report
Sun 21 May 2023
EGAF00007935273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518937
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA59971.1556316084611427No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43630.8407571632009281No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA32330.6230043338594088No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA28340.5461163879237749No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14510.2796100490040217No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13300.25629315311877937No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12640.24357484627228354No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12290.23683028961126304No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG11600.2235338779081083No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9810.18904028812746057No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9190.17709278775650994No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8860.17073363433326205No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC8730.16822851328774013No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8580.16533798900444563No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8300.1599423436756292No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT7570.1458751254969293No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7250.13970867369256768No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7200.13874516559813618No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7050.1358546413148417No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7020.13527653645818277No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6830.13161520569934307No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6730.12968818951048008No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6460.12448524580054997No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6120.11793339075841576No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6060.11677718104509795No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5920.11407935838068975No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5640.10868371305187334No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA5570.10733480171966925No Hit
CGTTCTGAAGAAGACAAACGTTTCGAATCCC5550.10694939848189665No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5280.10174645477196655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)