FastQCFastQC Report
Wed 31 May 2023
EGAF00007935278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519891
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29590.5691577657624387No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA28000.5385744319482353No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA26280.5054905739857009No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA25750.4952961293809664No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24380.4689444518177849No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA23240.4470167785170353No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22280.4285513694216672No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18390.3537279929831445No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16540.318143610872279No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16370.31487369467830756No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15510.29833176569704034No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14430.2775581804647513No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG14250.27409591625936974No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG11690.22485482533838824No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11610.22331604124710755No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10690.20562002419737985No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC10020.1927327074329042No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT10010.1925403594214941No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9650.1856158310107311No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9280.178498954588558No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9110.17522903839458656No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9070.17445964634894623No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG8990.17292086225766554No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8840.17003564208651428No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8510.16368815770998152No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8370.16099528555024034No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7620.14656918469448402No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7510.14445335656897312No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7350.14137578838641177No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7050.13560534804410923No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7020.135028304009879No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6860.13195073582731764No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6860.13195073582731764No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6790.13060429974744706No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG6660.12810377559911598No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6520.12541090343937478No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6480.12464151139373447No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6390.1229103792910437No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6050.11637054690310084No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG6030.11598585088028067No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6010.1156011548574605No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5740.11040775854938822No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5650.10867662644669748No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5620.10809958241246723No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5590.10752253837823698No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5570.1071378423554168No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5490.10559905826413613No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5450.10482966621849579No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5340.10271383809298487No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5200.1000209659332437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)