FastQCFastQC Report
Sun 21 May 2023
EGAF00007935280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556313
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13020.23404090862518043No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11710.21049301382495106No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10870.19539360036526202No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7490.13463643668222744No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7260.13050207347302686No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7230.1299628087066094No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7050.1267272201081046No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6550.11773947400114683No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6420.11540266001333782No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6250.11234682633697217No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5930.1065946688285192No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5910.10623515898424088No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5810.10443760976284933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)