FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556313
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26100.4691603467831958No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16120.28976493448831864No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12370.22235683868613532No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10100.18155247136054703No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8970.16124016515882247No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC8340.14991560506405566No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7830.14074810403495874No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7010.126008200419548No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6960.1251094258088522No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6880.12367138643173897No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6760.1215143273660691No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6760.1215143273660691No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6340.11396462063622456No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6290.1130658460255288No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6260.11252658125911132No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5890.10587564913996257No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5830.10479711960712763No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5680.1021007957750403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)