FastQCFastQC Report
Wed 31 May 2023
EGAF00007935282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446775
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17820.3988584858150075No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15100.3379777292820771No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8000.179061048626266No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5700.12758099714621454No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5450.12198533937664373No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5280.11818029209333557No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4800.10743662917575962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)