FastQCFastQC Report
Wed 31 May 2023
EGAF00007935285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences586922
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT63711.0854934727272108No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG19200.32713035122213857No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15960.2719271044534027No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15690.2673268338893413No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG14820.2525037398495882No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13930.237339885027312No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13760.23444341837586596No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13570.23120619094189687No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12080.20581951264392884No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11550.1967893519070677No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11420.19457440682066782No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11330.19304098329931405No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9780.1666320226537768No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9420.16049832856836174No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG9140.15572767761303888No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9100.15504615604799274No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8960.1526608305703313No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8130.1385192580956243No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8110.13817849731310122No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7640.1301706189238093No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7510.12795567383740938No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7230.12318502288208655No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7200.12267388170830196No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7150.12182197975199431No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7030.11977741505685593No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6550.11159915627630247No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6470.11023611314621024No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6050.10308013671322595No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5930.10103557201808758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)