FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454947
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG19100.4198291229527835No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13790.30311223065543896No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12450.2736582503016835No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9150.2011223285349722No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8270.1817794160638492No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6730.14792931923938393No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG5920.13012504753300932No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5160.1134198049443122No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT4860.10682563023824752No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4830.10616621276764106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)