FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454947
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47921.053309506382062No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32170.7071153343136672No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC21620.4752201904837267No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19840.43609475389440966No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9460.20793630906457233No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9040.19870446447608184No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6350.13957669794503536No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5860.1288062125917964No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5730.12594873688583505No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5400.11869514470916392No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5150.1131999991207767No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG4960.10902368847360241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)