FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472298
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24660.5221279785220349No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15830.335169744525702No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12040.25492379811051497No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11580.24518418456144214No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11240.23798533976430136No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9490.20093246213195906No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9200.19479227098145663No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9060.19182804077086923No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9060.19182804077086923No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7980.16896112200348085No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6590.13953055062693467No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6310.13360209020575992No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6300.13339035947643224No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6210.13148478291248322No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6050.1280970912432405No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6000.12703843759660213No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5900.12492113030332544No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5490.11624017040089098No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5320.11264074800232057No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5070.10734747976912881No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4970.1052301724758521No Hit

[OK]Adapter Content

Adapter graph