FastQCFastQC Report
Wed 31 May 2023
EGAF00007935292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440047
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20170.45836012971341694No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19880.45176992457623844No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16460.374050953648133No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14790.33610046199610494No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12320.27997009410358437No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9800.22270348394603304No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8780.1995241417394051No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6570.1493022336250446No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5810.13203135119657675No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5510.12521389760639207No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5430.12339590998234279No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5410.12294141307633048No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4950.11248798423804729No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4930.11203348733203498No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4920.11180623887902884No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4830.10976100280197343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)