FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439776
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47431.0785036018336607No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23540.5352725023648403No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT16830.38269482645710545No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13820.31425089136287565No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG8050.1830477333915448No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7210.1639471003419923No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6760.1537146183511606No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5990.13620570472240415No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5600.12733755366368332No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5350.1216528414465546No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4590.1043713163064833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)