FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442461
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28470.6434465410510757No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22430.5069373345899413No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21240.4800423088136581No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17180.3882828091063393No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16560.3742702746682759No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16510.373140231568432No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15600.3525734471512743No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13040.29471524043927033No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12750.2881609904601761No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12620.2852228784005822No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12120.2739224474021439No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11440.2585538612442679No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11290.2551637319447364No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG9730.21990638722960892No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8980.20295574073195152No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8630.19504543903304472No Hit
GAACCGATCTACGCTACCATCGACGACCTGG8580.1939153959332009No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8510.19233333559341953No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8220.18577908561432532No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG7940.1794508442551999No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7760.1753826890957621No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7720.17447865461588705No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7570.17108852531635557No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7270.1643082667172926No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6720.1518777926190105No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6700.15142577537907298No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6470.14622757711979134No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6460.14600156849982257No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6370.1439674909201037No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5950.13447512888141555No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5930.134023111641478No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5910.1335710944015405No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5850.13221504268172787No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5560.1256607927026337No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5120.115716413424008No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4640.10486799966550724No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4510.10192988760591329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)