FastQCFastQC Report
Sun 21 May 2023
EGAF00007935301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419906
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45051.072859163717594No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12140.28911232513943597No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10750.2560096783565846No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10590.2521993017484866No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10130.24124446900020483No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9430.22457407133977605No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9340.2224307344977209No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7510.1788495520426No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6540.15574914385600588No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6510.1550346982419875No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6240.1486046877158221No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6030.1436035684176935No Hit
ACCGGCTTTCCACCTCAGCCGGGTATGGCCC5700.13574466666349136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5590.13312503274542398No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5210.1240753883011912No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5100.12145575438312385No Hit
TTTCCGCCTCAGCCGGGTATGGCACCGCGCC4900.11669278362300133No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4500.10716684210275633No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4390.10454720818468895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)