FastQCFastQC Report
Sun 21 May 2023
EGAF00007935303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462380
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT56471.2212898481768244No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23780.5142956010208054No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23330.5045633461654916No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC19820.42865175829404384No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12720.27509840391020374No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11850.2562827111899304No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11690.25282235390804103No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10490.22686967429387087No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT9030.19529391409663047No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8390.18145248496907307No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7910.17107141312340501No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7770.16804360050175182No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7580.16393442622950818No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7360.15917643496691034No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC7230.15636489467537523No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6770.14641636748994333No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6020.130195942731087No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4970.1074873480686881No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4940.10683853107833384No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA4760.1029456291362083No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4670.10099917816514556No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4650.10056663350490938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)