FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465349
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59071.2693698707851526No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24950.536156733978154No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22380.48092936699122596No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC19750.42441264513300764No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12700.2729134477564151No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12400.2664666733999643No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11180.24024979101706462No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10290.22112436042626074No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT9220.1981308652215864No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8550.18373306915884638No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8070.17341823018852517No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7670.16482253104659084No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7650.1643927460894941No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7620.16374806865384905No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7150.1536481221620762No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC7040.15128430489804426No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6200.13323333669998216No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4920.10572709944579231No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4900.10529731448869557No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4860.10443774457450214No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4850.10422285209595379No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)