FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436622
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13170.3016339075905474No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11600.265676030983322No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10890.2494148256386531No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10680.2446051733536102No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8710.19948605429868396No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8660.1983408989927214No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8470.19398930883006352No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8330.19078287397336827No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7310.16742170573173135No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7290.1669636436093463No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7260.16627655042576872No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6990.16009271177357073No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6640.15207662463183258No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6300.1442895685512869No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6250.14314441324532434No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5790.13260898443046848No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5300.12138646243203502No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5210.11932518288130237No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5190.11886712075891731No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5120.1172639033305697No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5060.11588971696341457No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4720.10810266088286893No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4390.10054463586351581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)